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Re: Biologist new to cURL. Question about interacting with a form.

From: Shane Neeley <shane.neeley_at_gmail.com>
Date: Tue, 6 Mar 2012 16:31:24 -0800

Hi Bill,

I very much appreciate you getting back to me and helping out a beginner.
Also, thanks for the tip on asking the site owner what would be a
reasonable amount of requests per hour. What happens exactly when you
overload a server?

I have actually advanced this job somewhat using python. Do you know
anything about python programming? I have been able to fill out the form
simple in the url like this:

Submit_seq = "
http://consurf.tau.ac.il/cgi-bin/new_consurf.cgi?Run_Number=NONE&MAX_FILE_SIZE=2000000&PDB_yes_no=no&MSA_yes_no=no&FASTA_text=%s&MSAprogram=MAFFT&proteins_DB=UNIREF90&MAX_NUM_HOMOL=150&MAX_REDUNDANCY=95&MIN_IDENTITY=35&ITERATIONS=1&E_VALUE=0.0001&Homolog_search_algorithm=BLAST&ALGORITHM=Bayes&SUB_MATRIX=JTT&submitForm=Submit
" % (text,)

The %s after FASTA_text is connected to a variable of which I am looping
through many files of text. I could have also used curl to do this like you
said and it would have been cleaner. Also, if I could ever figure out how
to install PyCurl, I would be able to use it within the python code.

The major problem I am having now is uploading a file. On that server there
is an option to upload a multiple sequence alignment (MSA) when I do that
and look at the HTTP headers I see this:

Content-Disposition: form-data; name="MSA_yes_no"

yes

-----------------------------178448449274243042114807987

Content-Disposition: form-data; name="msa_FILE";
filename="MSAfromnakai.ashx.clustalw"

Content-Type: application/octet-stream

And then below is the text of the file I uploaded. I tried pasting that
text into the url for msa_FILE= but it said the URL length was too long
for the server. Do you have any ideas?

Thanks bill.

Shane

On Tue, Mar 6, 2012 at 11:59 AM, Bill Mercer <bmercer_at_nccer.org> wrote:

> This form is pretty straightforward, it should be easy to submit with curl.
> In this case you're doing a POST, so start out by reading the section on
> POST in the HTTP scripting guide.
> http://curl.haxx.se/docs/httpscripting.html
>
> Basically you'll be doing something like this:
>
> curl --data-urlencode "INSERT_YOUR_POST_DATA_HERE"
> http://consurf.tau.ac.il/cgi-bin/new_consurf.cgi
>
> Your post data will be a string that looks something like this.
>
> "MAX_FILE_SIZE=2000000&PDB_yes_no=no&MSA_yes_no=no&..."
>
> The main job you have is to construct the POST data string from your own
> results.
>
> Also note that the page you get right after submission is just a
> placeholder that gets refreshed in the browser until the results are ready.
> It's not easy to do that with curl, but the URL for the results is all you
> really need. Or you can use the email feature to get a notification.
>
> If you're planning to submit a large volume of results, make sure you
> insert a reasonable time delay between submissions so you don't overload
> the server. You might want to contact the site owner and ask them what they
> consider a reasonable number of requests per hour.
>
>
> >-----Original Message-----
> >From: curl-users-bounces_at_cool.haxx.se [mailto:curl-users-
> >bounces_at_cool.haxx.se] On Behalf Of Shane Neeley
> >Sent: Saturday, March 03, 2012 2:41 PM
> >To: curl-users_at_cool.haxx.se
> >Subject: Re: Biologist new to cURL. Question about interacting with a
> >form.
> >
> >Hi,
> >
> >These are the HTTP headers generated when I perform my job that I have
> >described in the previous email. Do you see how the pasting of FASTA
> >sequence (In Red) could be callable on cURL so that I could do it over
> >multiple FASTA sequence files?
> >
> >________________________________________________________________________
> >__________________
> >
> >http://consurf.tau.ac.il/cgi-bin/new_consurf.cgi
> >
> >POST /cgi-bin/new_consurf.cgi HTTP/1.1
> >Host: consurf.tau.ac.il
> >User-Agent: Mozilla/5.0 (Macintosh; U; Intel Mac OS X 10.7; en-US;
> >rv:1.9.2.27) Gecko/20120216 Firefox/3.6.27
> >Accept: text/html,application/xhtml+xml,application/xml;q=0.9,*/*;q=0.8
> >Accept-Language: en-us,en;q=0.5
> >Accept-Encoding: gzip,deflate
> >Accept-Charset: ISO-8859-1,utf-8;q=0.7,*;q=0.7
> >Keep-Alive: 115
> >Connection: keep-alive
> >Referer: http://consurf.tau.ac.il/index_full_form_PROT.php
> >Cookie: __utma=128144414.851853261.1330802995.1330802995.1330802995.1;
> >__utmb=128144414.3.10.1330802995; __utmc=128144414;
> >__utmz=128144414.1330802995.1.1.utmcsr=google|utmccn=(organic)|utmcmd=or
> >ganic|utmctr=consurf
> >Content-Type: multipart/form-data; boundary=---------------------------
> >168072824752491622650073
> >Content-Length: 2301
> >-----------------------------168072824752491622650073
> >Content-Disposition: form-data; name="Run_Number"
> >
> >NONE
> >-----------------------------168072824752491622650073
> >Content-Disposition: form-data; name="MAX_FILE_SIZE"
> >
> >2000000
> >-----------------------------168072824752491622650073
> >Content-Disposition: form-data; name="PDB_yes_no"
> >
> >no
> >-----------------------------168072824752491622650073
> >Content-Disposition: form-data; name="MSA_yes_no"
> >
> >no
> >-----------------------------168072824752491622650073
> >Content-Disposition: form-data; name="FASTA_text"
> >
> >>
> >DGVGSSSGNWHCDSTWLGDRVITTSTRTWALPTYNNHLYKQISNGTSGGATNDNTYFGYST
> >-----------------------------168072824752491622650073
> >Content-Disposition: form-data; name="MSAprogram"
> >
> >MAFFT
> >-----------------------------168072824752491622650073
> >Content-Disposition: form-data; name="proteins_DB"
> >
> >UNIREF90
> >-----------------------------168072824752491622650073
> >Content-Disposition: form-data; name="MAX_NUM_HOMOL"
> >
> >150
> >-----------------------------168072824752491622650073
> >Content-Disposition: form-data; name="MAX_REDUNDANCY"
> >
> >95
> >-----------------------------168072824752491622650073
> >Content-Disposition: form-data; name="MIN_IDENTITY"
> >
> >35
> >-----------------------------168072824752491622650073
> >Content-Disposition: form-data; name="ITERATIONS"
> >
> >1
> >-----------------------------168072824752491622650073
> >Content-Disposition: form-data; name="E_VALUE"
> >
> >0.0001
> >-----------------------------168072824752491622650073
> >Content-Disposition: form-data; name="Homolog_search_algorithm"
> >
> >BLAST
> >-----------------------------168072824752491622650073
> >Content-Disposition: form-data; name="ALGORITHM"
> >
> >Bayes
> >-----------------------------168072824752491622650073
> >Content-Disposition: form-data; name="SUB_MATRIX"
> >
> >JTT
> >-----------------------------168072824752491622650073
> >Content-Disposition: form-data; name="JOB_TITLE"
> >
> >
> >-----------------------------168072824752491622650073
> >Content-Disposition: form-data; name="user_email"
> >
> >
> >-----------------------------168072824752491622650073
> >Content-Disposition: form-data; name="send_user_mail"
> >
> >yes
> >-----------------------------168072824752491622650073
> >Content-Disposition: form-data; name="submitForm"
> >
> >Submit
> >-----------------------------168072824752491622650073--
> >
> >HTTP/1.1 302 Found
> >Date: Sat, 03 Mar 2012 19:31:39 GMT
> >Server: Apache/2.2.8 (EL)
> >Location: http://consurf.tau.ac.il/results/1330803099/output.php
> >Content-Length: 238
> >Connection: close
> >Content-Type: text/html; charset=iso-8859-1
> >----------------------------------------------------------
> >http://consurf.tau.ac.il/results/1330803099/output.php
> >
> >GET /results/1330803099/output.php HTTP/1.1
> >Host: consurf.tau.ac.il
> >User-Agent: Mozilla/5.0 (Macintosh; U; Intel Mac OS X 10.7; en-US;
> >rv:1.9.2.27) Gecko/20120216 Firefox/3.6.27
> >Accept: text/html,application/xhtml+xml,application/xml;q=0.9,*/*;q=0.8
> >Accept-Language: en-us,en;q=0.5
> >Accept-Encoding: gzip,deflate
> >Accept-Charset: ISO-8859-1,utf-8;q=0.7,*;q=0.7
> >Keep-Alive: 115
> >Connection: keep-alive
> >Referer: http://consurf.tau.ac.il/index_full_form_PROT.php
> >Cookie: __utma=128144414.851853261.1330802995.1330802995.1330802995.1;
> >__utmb=128144414.3.10.1330802995; __utmc=128144414;
> >__utmz=128144414.1330802995.1.1.utmcsr=google|utmccn=(organic)|utmcmd=or
> >ganic|utmctr=consurf
> >
> >HTTP/1.1 200 OK
> >Date: Sat, 03 Mar 2012 19:31:41 GMT
> >Server: Apache/2.2.8 (EL)
> >X-Powered-By: PHP/5.1.6
> >Content-Length: 4123
> >Connection: close
> >Content-Type: text/html; charset=UTF-8
> >----------------------------------------------------------
> >http://www.google-
> >analytics.com/__utm.gif?utmwv=5.2.5&utms=4&utmn=1200564064&utmhn=consurf
> >.tau.ac.il&utmcs=UTF-8&utmsr=1280x800&utmvp=994x637&utmsc=24-
> >bit&utmul=en-
> >us&utmje=1&utmfl=10.3%20r183&utmdt=ConSurf%20run%20no.%201330803099%20no
> >%20PDB&utmhid=1772989055&utmr=0&utmp=%2Fresults%2F1330803099%2Foutput.ph
> >p&utmac=UA-12265767-
> >3&utmcc=__utma%3D128144414.851853261.1330802995.1330802995.1330802995.1%
> >3B%2B__utmz%3D128144414.1330802995.1.1.utmcsr%3Dgoogle%7Cutmccn%3D(organ
> >ic)%7Cutmcmd%3Dorganic%7Cutmctr%3Dconsurf%3B&utmu=D~
> >
> >GET
> >/__utm.gif?utmwv=5.2.5&utms=4&utmn=1200564064&utmhn=consurf.tau.ac.il&ut
> >mcs=UTF-8&utmsr=1280x800&utmvp=994x637&utmsc=24-bit&utmul=en-
> >us&utmje=1&utmfl=10.3%20r183&utmdt=ConSurf%20run%20no.%201330803099%20no
> >%20PDB&utmhid=1772989055&utmr=0&utmp=%2Fresults%2F1330803099%2Foutput.ph
> >p&utmac=UA-12265767-
> >3&utmcc=__utma%3D128144414.851853261.1330802995.1330802995.1330802995.1%
> >3B%2B__utmz%3D128144414.1330802995.1.1.utmcsr%3Dgoogle%7Cutmccn%3D(organ
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> >Host: www.google-analytics.com
> >User-Agent: Mozilla/5.0 (Macintosh; U; Intel Mac OS X 10.7; en-US;
> >rv:1.9.2.27) Gecko/20120216 Firefox/3.6.27
> >Accept: image/png,image/*;q=0.8,*/*;q=0.5
> >Accept-Language: en-us,en;q=0.5
> >Accept-Encoding: gzip,deflate
> >Accept-Charset: ISO-8859-1,utf-8;q=0.7,*;q=0.7
> >Keep-Alive: 115
> >Connection: keep-alive
> >Referer: http://consurf.tau.ac.il/results/1330803099/output.php
> >
> >HTTP/1.1 200 OK
> >Date: Thu, 01 Mar 2012 23:42:00 GMT
> >Content-Length: 35
> >X-Content-Type-Options: nosniff
> >Pragma: no-cache
> >Expires: Wed, 19 Apr 2000 11:43:00 GMT
> >Last-Modified: Wed, 21 Jan 2004 19:51:30 GMT
> >Content-Type: image/gif
> >Cache-Control: private, no-cache, no-cache=Set-Cookie, proxy-revalidate
> >Age: 157781
> >Server: GFE/2.0
> >----------------------------------------------------------
> >http://consurf.tau.ac.il/results/1330803099/output.php
> >
> >GET /results/1330803099/output.php HTTP/1.1
> >Host: consurf.tau.ac.il
> >User-Agent: Mozilla/5.0 (Macintosh; U; Intel Mac OS X 10.7; en-US;
> >rv:1.9.2.27) Gecko/20120216 Firefox/3.6.27
> >Accept: text/html,application/xhtml+xml,application/xml;q=0.9,*/*;q=0.8
> >Accept-Language: en-us,en;q=0.5
> >Accept-Encoding: gzip,deflate
> >Accept-Charset: ISO-8859-1,utf-8;q=0.7,*;q=0.7
> >Keep-Alive: 115
> >Connection: keep-alive
> >Cookie: __utma=128144414.851853261.1330802995.1330802995.1330802995.1;
> >__utmb=128144414.4.10.1330802995; __utmc=128144414;
> >__utmz=128144414.1330802995.1.1.utmcsr=google|utmccn=(organic)|utmcmd=or
> >ganic|utmctr=consurf
> >Cache-Control: max-age=0
> >
> >HTTP/1.1 200 OK
> >Date: Sat, 03 Mar 2012 19:32:11 GMT
> >Server: Apache/2.2.8 (EL)
> >X-Powered-By: PHP/5.1.6
> >Connection: close
> >Transfer-Encoding: chunked
> >Content-Type: text/html; charset=UTF-8
> >----------------------------------------------------------
> >http://consurf.tau.ac.il/javascript_functions.js
> >
> >GET /javascript_functions.js HTTP/1.1
> >Host: consurf.tau.ac.il
> >User-Agent: Mozilla/5.0 (Macintosh; U; Intel Mac OS X 10.7; en-US;
> >rv:1.9.2.27) Gecko/20120216 Firefox/3.6.27
> >Accept: */*
> >Accept-Language: en-us,en;q=0.5
> >Accept-Encoding: gzip,deflate
> >Accept-Charset: ISO-8859-1,utf-8;q=0.7,*;q=0.7
> >Keep-Alive: 115
> >Connection: keep-alive
> >Referer: http://consurf.tau.ac.il/results/1330803099/output.php
> >Cookie: __utma=128144414.851853261.1330802995.1330802995.1330802995.1;
> >__utmb=128144414.4.10.1330802995; __utmc=128144414;
> >__utmz=128144414.1330802995.1.1.utmcsr=google|utmccn=(organic)|utmcmd=or
> >ganic|utmctr=consurf
> >If-Modified-Since: Wed, 25 Jan 2012 10:51:11 GMT
> >If-None-Match: "68073-4d74-4b7580aada5c0"
> >Cache-Control: max-age=0
> >
> >HTTP/1.1 304 Not Modified
> >Date: Sat, 03 Mar 2012 19:32:12 GMT
> >Server: Apache/2.2.8 (EL)
> >Connection: close
> >Etag: "68073-4d74-4b7580aada5c0"
> >----------------------------------------------------------
> >http://consurf.tau.ac.il/text_8_7.css
> >
> >GET /text_8_7.css HTTP/1.1
> >Host: consurf.tau.ac.il
> >User-Agent: Mozilla/5.0 (Macintosh; U; Intel Mac OS X 10.7; en-US;
> >rv:1.9.2.27) Gecko/20120216 Firefox/3.6.27
> >Accept: text/css,*/*;q=0.1
> >Accept-Language: en-us,en;q=0.5
> >Accept-Encoding: gzip,deflate
> >Accept-Charset: ISO-8859-1,utf-8;q=0.7,*;q=0.7
> >Keep-Alive: 115
> >Connection: keep-alive
> >Referer: http://consurf.tau.ac.il/results/1330803099/output.php
> >Cookie: __utma=128144414.851853261.1330802995.1330802995.1330802995.1;
> >__utmb=128144414.4.10.1330802995; __utmc=128144414;
> >__utmz=128144414.1330802995.1.1.utmcsr=google|utmccn=(organic)|utmcmd=or
> >ganic|utmctr=consurf
> >If-Modified-Since: Wed, 25 Jan 2012 10:51:13 GMT
> >If-None-Match: "680d7-f19-4b7580acc2a40"
> >Cache-Control: max-age=0
> >
> >HTTP/1.1 304 Not Modified
> >Date: Sat, 03 Mar 2012 19:32:12 GMT
> >Server: Apache/2.2.8 (EL)
> >Connection: close
> >Etag: "680d7-f19-4b7580acc2a40"
> >----------------------------------------------------------
> >http://www.google-analytics.com/ga.js
> >
> >GET /ga.js HTTP/1.1
> >Host: www.google-analytics.com
> >User-Agent: Mozilla/5.0 (Macintosh; U; Intel Mac OS X 10.7; en-US;
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> >Accept: */*
> >Accept-Language: en-us,en;q=0.5
> >Accept-Encoding: gzip,deflate
> >Accept-Charset: ISO-8859-1,utf-8;q=0.7,*;q=0.7
> >Keep-Alive: 115
> >Connection: keep-alive
> >Referer: http://consurf.tau.ac.il/results/1330803099/output.php
> >If-Modified-Since: Thu, 16 Feb 2012 00:48:45 GMT
> >Cache-Control: max-age=0
> >
> >HTTP/1.1 304 Not Modified
> >Date: Sat, 03 Mar 2012 17:42:01 GMT
> >Expires: Sat, 03 Mar 2012 19:42:01 GMT
> >Age: 6611
> >Server: GFE/2.0
> >----------------------------------------------------------
> >http://www.google-
> >analytics.com/__utm.gif?utmwv=5.2.5&utms=5&utmn=522809432&utmhn=consurf.
> >tau.ac.il&utmcs=UTF-8&utmsr=1280x800&utmvp=994x637&utmsc=24-
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> >%20PDB&utmhid=74642245&utmr=-
> >&utmp=%2Fresults%2F1330803099%2Foutput.php&utmac=UA-12265767-
> >3&utmcc=__utma%3D128144414.851853261.1330802995.1330802995.1330802995.1%
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> >ic)%7Cutmcmd%3Dorganic%7Cutmctr%3Dconsurf%3B&utmu=D~
> >
> >GET
> >/__utm.gif?utmwv=5.2.5&utms=5&utmn=522809432&utmhn=consurf.tau.ac.il&utm
> >cs=UTF-8&utmsr=1280x800&utmvp=994x637&utmsc=24-bit&utmul=en-
> >us&utmje=1&utmfl=10.3%20r183&utmdt=ConSurf%20run%20no.%201330803099%20no
> >%20PDB&utmhid=74642245&utmr=-
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> >3&utmcc=__utma%3D128144414.851853261.1330802995.1330802995.1330802995.1%
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> >Host: www.google-analytics.com
> >User-Agent: Mozilla/5.0 (Macintosh; U; Intel Mac OS X 10.7; en-US;
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> >Accept-Encoding: gzip,deflate
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> >Keep-Alive: 115
> >Connection: keep-alive
> >Referer: http://consurf.tau.ac.il/results/1330803099/output.php
> >
> >HTTP/1.1 200 OK
> >Date: Thu, 01 Mar 2012 23:42:00 GMT
> >Content-Length: 35
> >X-Content-Type-Options: nosniff
> >Pragma: no-cache
> >Expires: Wed, 19 Apr 2000 11:43:00 GMT
> >Last-Modified: Wed, 21 Jan 2004 19:51:30 GMT
> >Content-Type: image/gif
> >Cache-Control: private, no-cache, no-cache=Set-Cookie, proxy-revalidate
> >Age: 157812
> >Server: GFE/2.0
> >----------------------------------------------------------
> >http://consurf.tau.ac.il/consurf_logo.bmp
> >
> >GET /consurf_logo.bmp HTTP/1.1
> >Host: consurf.tau.ac.il
> >User-Agent: Mozilla/5.0 (Macintosh; U; Intel Mac OS X 10.7; en-US;
> >rv:1.9.2.27) Gecko/20120216 Firefox/3.6.27
> >Accept: image/png,image/*;q=0.8,*/*;q=0.5
> >Accept-Language: en-us,en;q=0.5
> >Accept-Encoding: gzip,deflate
> >Accept-Charset: ISO-8859-1,utf-8;q=0.7,*;q=0.7
> >Keep-Alive: 115
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> >__utmz=128144414.1330802995.1.1.utmcsr=google|utmccn=(organic)|utmcmd=or
> >ganic|utmctr=consurf
> >If-Modified-Since: Mon, 27 Aug 2007 16:38:05 GMT
> >If-None-Match: "604eb-53a96-438b0fb199540"
> >Cache-Control: max-age=0
> >
> >HTTP/1.1 304 Not Modified
> >Date: Sat, 03 Mar 2012 19:32:13 GMT
> >Server: Apache/2.2.8 (EL)
> >Connection: close
> >Etag: "604eb-53a96-438b0fb199540"
> >----------------------------------------------------------
> >http://safebrowsing-
> >cache.google.com/safebrowsing/rd/ChNnb29nLW1hbHdhcmUtc2hhdmFyEAAYgasEIIC
> >wBCo4aRYBAP_____________________________________________________________
> >______wAyIoEVAQD______________________________________wA
> >
> >GET
> >/safebrowsing/rd/ChNnb29nLW1hbHdhcmUtc2hhdmFyEAAYgasEIICwBCo4aRYBAP_____
> >______________________________________________________________wAyIoEVAQD
> >______________________________________wA HTTP/1.1
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> >Accept: text/html,application/xhtml+xml,application/xml;q=0.9,*/*;q=0.8
> >Accept-Language: en-us,en;q=0.5
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> >Accept-Charset: ISO-8859-1,utf-8;q=0.7,*;q=0.7
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> >Connection: keep-alive
> >Cookie:
> >PREF=ID=ea5a9a1b579b2f90:U=6b6d71e20c67d066:TM=1330802864:LM=1330802866:
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> >TwLgD0aNng-Us_jWb; GuidedHelpResume=1663256:startNotSignedIn
> >Pragma: no-cache
> >Cache-Control: no-cache
> >
> >HTTP/1.1 200 OK
> >Content-Type: application/vnd.google.safebrowsing-chunk
> >X-Content-Type-Options: nosniff
> >Date: Sat, 03 Mar 2012 19:28:40 GMT
> >Server: Chunked Update Server
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> >X-Frame-Options: SAMEORIGIN
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> >----------------------------------------------------------
> >http://safebrowsing-
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> >qJvhwAQD___________________________________________8BMoMBAW0BAP_________
> >______________________9________f________________________________________
> >________________________________________________________________________
> >______________38
> >
> >GET
> >/safebrowsing/rd/ChFnb29nLXBoaXNoLXNoYXZhchABGIHaBSCA5AUqJvhwAQD________
> >___________________________________8BMoMBAW0BAP_________________________
> >______9________f________________________________________________________
> >______________________________________________________________________38
> >HTTP/1.1
> >Host: safebrowsing-cache.google.com
> >User-Agent: Mozilla/5.0 (Macintosh; U; Intel Mac OS X 10.7; en-US;
> >rv:1.9.2.27) Gecko/20120216 Firefox/3.6.27
> >Accept: text/html,application/xhtml+xml,application/xml;q=0.9,*/*;q=0.8
> >Accept-Language: en-us,en;q=0.5
> >Accept-Encoding: gzip,deflate
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> >Keep-Alive: 115
> >Connection: keep-alive
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> >TwLgD0aNng-Us_jWb; GuidedHelpResume=1663256:startNotSignedIn
> >Pragma: no-cache
> >Cache-Control: no-cache
> >
> >HTTP/1.1 200 OK
> >Content-Type: application/vnd.google.safebrowsing-chunk
> >X-Content-Type-Options: nosniff
> >Date: Sat, 03 Mar 2012 19:28:43 GMT
> >Server: Chunked Update Server
> >Content-Length: 61064
> >X-XSS-Protection: 1; mode=block
> >X-Frame-Options: SAMEORIGIN
> >Cache-Control: public,max-age=172800
> >Age: 217
> >----------------------------------------------------------
> >http://safebrowsing-
> >cache.google.com/safebrowsing/rd/ChFnb29nLXBoaXNoLXNoYXZhchAAGIGnDCDAqQw
> >yLYETAwD______________-______________________________________AA
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> >GET
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> >______-______________________________________AA HTTP/1.1
> >Host: safebrowsing-cache.google.com
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> >Accept: text/html,application/xhtml+xml,application/xml;q=0.9,*/*;q=0.8
> >Accept-Language: en-us,en;q=0.5
> >Accept-Encoding: gzip,deflate
> >Accept-Charset: ISO-8859-1,utf-8;q=0.7,*;q=0.7
> >Keep-Alive: 115
> >Connection: keep-alive
> >Cookie:
> >PREF=ID=ea5a9a1b579b2f90:U=6b6d71e20c67d066:TM=1330802864:LM=1330802866:
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> >TwLgD0aNng-Us_jWb; GuidedHelpResume=1663256:startNotSignedIn
> >Pragma: no-cache
> >Cache-Control: no-cache
> >
> >HTTP/1.1 200 OK
> >Content-Type: application/vnd.google.safebrowsing-chunk
> >X-Content-Type-Options: nosniff
> >Date: Sat, 03 Mar 2012 13:36:53 GMT
> >Server: Chunked Update Server
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> >X-XSS-Protection: 1; mode=block
> >X-Frame-Options: SAMEORIGIN
> >Cache-Control: public,max-age=172800
> >Age: 21327
> >----------------------------------------------------------
> >http://safebrowsing-
> >cache.google.com/safebrowsing/rd/ChFnb29nLXBoaXNoLXNoYXZhchAAGMGpDCCArAw
> >yLcEUAwD_____________________________________________________AA
> >
> >GET
> >/safebrowsing/rd/ChFnb29nLXBoaXNoLXNoYXZhchAAGMGpDCCArAwyLcEUAwD________
> >_____________________________________________AA HTTP/1.1
> >Host: safebrowsing-cache.google.com
> >User-Agent: Mozilla/5.0 (Macintosh; U; Intel Mac OS X 10.7; en-US;
> >rv:1.9.2.27) Gecko/20120216 Firefox/3.6.27
> >Accept: text/html,application/xhtml+xml,application/xml;q=0.9,*/*;q=0.8
> >Accept-Language: en-us,en;q=0.5
> >Accept-Encoding: gzip,deflate
> >Accept-Charset: ISO-8859-1,utf-8;q=0.7,*;q=0.7
> >Keep-Alive: 115
> >Connection: keep-alive
> >Cookie:
> >PREF=ID=ea5a9a1b579b2f90:U=6b6d71e20c67d066:TM=1330802864:LM=1330802866:
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> >TwLgD0aNng-Us_jWb; GuidedHelpResume=1663256:startNotSignedIn
> >Pragma: no-cache
> >Cache-Control: no-cache
> >
> >HTTP/1.1 200 OK
> >Content-Type: application/vnd.google.safebrowsing-chunk
> >X-Content-Type-Options: nosniff
> >Date: Sat, 03 Mar 2012 13:36:17 GMT
> >Server: Chunked Update Server
> >Content-Length: 110783
> >X-XSS-Protection: 1; mode=block
> >X-Frame-Options: SAMEORIGIN
> >Cache-Control: public,max-age=172800
> >Age: 21363
> >----------------------------------------------------------
> >http://safebrowsing-
> >cache.google.com/safebrowsing/rd/ChFnb29nLXBoaXNoLXNoYXZhchAAGIGsDCDArgw
> >yLQEWAwD_____________________________________________________AA
> >
> >GET
> >/safebrowsing/rd/ChFnb29nLXBoaXNoLXNoYXZhchAAGIGsDCDArgwyLQEWAwD________
> >_____________________________________________AA HTTP/1.1
> >Host: safebrowsing-cache.google.com
> >User-Agent: Mozilla/5.0 (Macintosh; U; Intel Mac OS X 10.7; en-US;
> >rv:1.9.2.27) Gecko/20120216 Firefox/3.6.27
> >Accept: text/html,application/xhtml+xml,application/xml;q=0.9,*/*;q=0.8
> >Accept-Language: en-us,en;q=0.5
> >Accept-Encoding: gzip,deflate
> >Accept-Charset: ISO-8859-1,utf-8;q=0.7,*;q=0.7
> >Keep-Alive: 115
> >Connection: keep-alive
> >Cookie:
> >PREF=ID=ea5a9a1b579b2f90:U=6b6d71e20c67d066:TM=1330802864:LM=1330802866:
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> >F44MmgFtfjIFarMMmDv3HvAmgXSYE748BGydeZVMhw6ZlV75D4nuJTnT48zOn7sJt2vSDI_1
> >TwLgD0aNng-Us_jWb; GuidedHelpResume=1663256:startNotSignedIn
> >Pragma: no-cache
> >Cache-Control: no-cache
> >
> >HTTP/1.1 200 OK
> >Content-Type: application/vnd.google.safebrowsing-chunk
> >X-Content-Type-Options: nosniff
> >Date: Fri, 02 Mar 2012 18:44:20 GMT
> >Server: Chunked Update Server
> >Content-Length: 112762
> >X-XSS-Protection: 1; mode=block
> >X-Frame-Options: SAMEORIGIN
> >Cache-Control: public,max-age=172800
> >Age: 89281
> >----------------------------------------------------------
> >http://safebrowsing-
> >cache.google.com/safebrowsing/rd/ChFnb29nLXBoaXNoLXNoYXZhchAAGMGuDCCAsQw
> >yLUEXAwD_____________________________________________________AA
> >
> >GET
> >/safebrowsing/rd/ChFnb29nLXBoaXNoLXNoYXZhchAAGMGuDCCAsQwyLUEXAwD________
> >_____________________________________________AA HTTP/1.1
> >Host: safebrowsing-cache.google.com
> >User-Agent: Mozilla/5.0 (Macintosh; U; Intel Mac OS X 10.7; en-US;
> >rv:1.9.2.27) Gecko/20120216 Firefox/3.6.27
> >Accept: text/html,application/xhtml+xml,application/xml;q=0.9,*/*;q=0.8
> >Accept-Language: en-us,en;q=0.5
> >Accept-Encoding: gzip,deflate
> >Accept-Charset: ISO-8859-1,utf-8;q=0.7,*;q=0.7
> >Keep-Alive: 115
> >Connection: keep-alive
> >Cookie:
> >PREF=ID=ea5a9a1b579b2f90:U=6b6d71e20c67d066:TM=1330802864:LM=1330802866:
> >S=8rg_a0YASysxY_vs; NID=57=HnC0Mttu-MpLiEjPqxXoomslWMffUHMCvMU1qW-
> >F44MmgFtfjIFarMMmDv3HvAmgXSYE748BGydeZVMhw6ZlV75D4nuJTnT48zOn7sJt2vSDI_1
> >TwLgD0aNng-Us_jWb; GuidedHelpResume=1663256:startNotSignedIn
> >Pragma: no-cache
> >Cache-Control: no-cache
> >
> >HTTP/1.1 200 OK
> >Content-Type: application/vnd.google.safebrowsing-chunk
> >X-Content-Type-Options: nosniff
> >Date: Sat, 03 Mar 2012 13:20:11 GMT
> >Server: Chunked Update Server
> >Content-Length: 118923
> >X-XSS-Protection: 1; mode=block
> >X-Frame-Options: SAMEORIGIN
> >Cache-Control: public,max-age=172800
> >Age: 22330
> >----------------------------------------------------------
> >http://safebrowsing-
> >cache.google.com/safebrowsing/rd/ChFnb29nLXBoaXNoLXNoYXZhchAAGIGxDCCAtgw
> >qUaEYAwD________________________________________________________________
> >_____________________________________ADIJgRgDAP____8A
> >
> >GET
> >/safebrowsing/rd/ChFnb29nLXBoaXNoLXNoYXZhchAAGIGxDCCAtgwqUaEYAwD________
> >________________________________________________________________________
> >_____________________ADIJgRgDAP____8A HTTP/1.1
> >Host: safebrowsing-cache.google.com
> >User-Agent: Mozilla/5.0 (Macintosh; U; Intel Mac OS X 10.7; en-US;
> >rv:1.9.2.27) Gecko/20120216 Firefox/3.6.27
> >Accept: text/html,application/xhtml+xml,application/xml;q=0.9,*/*;q=0.8
> >Accept-Language: en-us,en;q=0.5
> >Accept-Encoding: gzip,deflate
> >Accept-Charset: ISO-8859-1,utf-8;q=0.7,*;q=0.7
> >Keep-Alive: 115
> >Connection: keep-alive
> >Cookie:
> >PREF=ID=ea5a9a1b579b2f90:U=6b6d71e20c67d066:TM=1330802864:LM=1330802866:
> >S=8rg_a0YASysxY_vs; NID=57=HnC0Mttu-MpLiEjPqxXoomslWMffUHMCvMU1qW-
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> >TwLgD0aNng-Us_jWb; GuidedHelpResume=1663256:startNotSignedIn
> >Pragma: no-cache
> >Cache-Control: no-cache
> >
> >HTTP/1.1 200 OK
> >Content-Type: application/vnd.google.safebrowsing-chunk
> >X-Content-Type-Options: nosniff
> >Date: Sat, 03 Mar 2012 19:28:40 GMT
> >Server: Chunked Update Server
> >Content-Length: 14627
> >X-XSS-Protection: 1; mode=block
> >X-Frame-Options: SAMEORIGIN
> >Cache-Control: public,max-age=172800
> >Age: 222
> >----------------------------------------------------------
> >http://consurf.tau.ac.il/results/1330803099/output.php
> >
> >GET /results/1330803099/output.php HTTP/1.1
> >Host: consurf.tau.ac.il
> >User-Agent: Mozilla/5.0 (Macintosh; U; Intel Mac OS X 10.7; en-US;
> >rv:1.9.2.27) Gecko/20120216 Firefox/3.6.27
> >Accept: text/html,application/xhtml+xml,application/xml;q=0.9,*/*;q=0.8
> >Accept-Language: en-us,en;q=0.5
> >Accept-Encoding: gzip,deflate
> >Accept-Charset: ISO-8859-1,utf-8;q=0.7,*;q=0.7
> >Keep-Alive: 115
> >Connection: keep-alive
> >Cookie: __utma=128144414.851853261.1330802995.1330802995.1330802995.1;
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> >Cache-Control: max-age=0
> >
> >HTTP/1.1 200 OK
> >Date: Sat, 03 Mar 2012 19:32:43 GMT
> >Server: Apache/2.2.8 (EL)
> >X-Powered-By: PHP/5.1.6
> >Content-Length: 4554
> >Connection: close
> >Content-Type: text/html; charset=UTF-8
> >----------------------------------------------------------
> >http://consurf.tau.ac.il/javascript_functions.js
> >
> >GET /javascript_functions.js HTTP/1.1
> >Host: consurf.tau.ac.il
> >User-Agent: Mozilla/5.0 (Macintosh; U; Intel Mac OS X 10.7; en-US;
> >rv:1.9.2.27) Gecko/20120216 Firefox/3.6.27
> >Accept: */*
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> >Accept-Charset: ISO-8859-1,utf-8;q=0.7,*;q=0.7
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> >Connection: keep-alive
> >Referer: http://consurf.tau.ac.il/results/1330803099/output.php
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> >If-Modified-Since: Wed, 25 Jan 2012 10:51:11 GMT
> >If-None-Match: "68073-4d74-4b7580aada5c0"
> >Cache-Control: max-age=0
> >
> >HTTP/1.1 304 Not Modified
> >Date: Sat, 03 Mar 2012 19:32:44 GMT
> >Server: Apache/2.2.8 (EL)
> >Connection: close
> >Etag: "68073-4d74-4b7580aada5c0"
> >----------------------------------------------------------
> >http://consurf.tau.ac.il/text_8_7.css
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> >GET /text_8_7.css HTTP/1.1
> >Host: consurf.tau.ac.il
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> >Accept-Language: en-us,en;q=0.5
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> >Referer: http://consurf.tau.ac.il/results/1330803099/output.php
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> >__utmz=128144414.1330802995.1.1.utmcsr=google|utmccn=(organic)|utmcmd=or
> >ganic|utmctr=consurf
> >If-Modified-Since: Wed, 25 Jan 2012 10:51:13 GMT
> >If-None-Match: "680d7-f19-4b7580acc2a40"
> >Cache-Control: max-age=0
> >
> >HTTP/1.1 304 Not Modified
> >Date: Sat, 03 Mar 2012 19:32:44 GMT
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> >----------------------------------------------------------
> >http://www.google-analytics.com/ga.js
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> >Referer: http://consurf.tau.ac.il/results/1330803099/output.php
> >If-Modified-Since: Thu, 16 Feb 2012 00:48:45 GMT
> >Cache-Control: max-age=0
> >
> >HTTP/1.1 304 Not Modified
> >Date: Sat, 03 Mar 2012 17:42:01 GMT
> >Expires: Sat, 03 Mar 2012 19:42:01 GMT
> >Age: 6643
> >Server: GFE/2.0
> >----------------------------------------------------------
> >http://www.google-
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> >ic)%7Cutmcmd%3Dorganic%7Cutmctr%3Dconsurf%3B&utmu=D~
> >
> >GET
> >/__utm.gif?utmwv=5.2.5&utms=6&utmn=147250340&utmhn=consurf.tau.ac.il&utm
> >cs=UTF-8&utmsr=1280x800&utmvp=994x637&utmsc=24-bit&utmul=en-
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> >Keep-Alive: 115
> >Connection: keep-alive
> >Referer: http://consurf.tau.ac.il/results/1330803099/output.php
> >
> >HTTP/1.1 200 OK
> >Date: Thu, 01 Mar 2012 23:42:00 GMT
> >Content-Length: 35
> >X-Content-Type-Options: nosniff
> >Pragma: no-cache
> >Expires: Wed, 19 Apr 2000 11:43:00 GMT
> >Last-Modified: Wed, 21 Jan 2004 19:51:30 GMT
> >Content-Type: image/gif
> >Cache-Control: private, no-cache, no-cache=Set-Cookie, proxy-revalidate
> >Age: 157844
> >Server: GFE/2.0
> >----------------------------------------------------------
> >http://consurf.tau.ac.il/consurf_logo.bmp
> >
> >GET /consurf_logo.bmp HTTP/1.1
> >Host: consurf.tau.ac.il
> >User-Agent: Mozilla/5.0 (Macintosh; U; Intel Mac OS X 10.7; en-US;
> >rv:1.9.2.27) Gecko/20120216 Firefox/3.6.27
> >Accept: image/png,image/*;q=0.8,*/*;q=0.5
> >Accept-Language: en-us,en;q=0.5
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> >Connection: keep-alive
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> >If-Modified-Since: Mon, 27 Aug 2007 16:38:05 GMT
> >If-None-Match: "604eb-53a96-438b0fb199540"
> >Cache-Control: max-age=0
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> >HTTP/1.1 304 Not Modified
> >Date: Sat, 03 Mar 2012 19:32:45 GMT
> >Server: Apache/2.2.8 (EL)
> >Connection: close
> >Etag: "604eb-53a96-438b0fb199540"
> >----------------------------------------------------------
> >http://consurf.tau.ac.il/results/1330803099/output.php
> >
> >GET /results/1330803099/output.php HTTP/1.1
> >Host: consurf.tau.ac.il
> >User-Agent: Mozilla/5.0 (Macintosh; U; Intel Mac OS X 10.7; en-US;
> >rv:1.9.2.27) Gecko/20120216 Firefox/3.6.27
> >Accept: text/html,application/xhtml+xml,application/xml;q=0.9,*/*;q=0.8
> >Accept-Language: en-us,en;q=0.5
> >Accept-Encoding: gzip,deflate
> >Accept-Charset: ISO-8859-1,utf-8;q=0.7,*;q=0.7
> >Keep-Alive: 115
> >Connection: keep-alive
> >Cookie: __utma=128144414.851853261.1330802995.1330802995.1330802995.1;
> >__utmb=128144414.6.10.1330802995; __utmc=128144414;
> >__utmz=128144414.1330802995.1.1.utmcsr=google|utmccn=(organic)|utmcmd=or
> >ganic|utmctr=consurf
> >Cache-Control: max-age=0
> >
> >HTTP/1.1 200 OK
> >Date: Sat, 03 Mar 2012 19:33:15 GMT
> >Server: Apache/2.2.8 (EL)
> >X-Powered-By: PHP/5.1.6
> >Connection: close
> >Transfer-Encoding: chunked
> >Content-Type: text/html; charset=UTF-8
> >----------------------------------------------------------
> >http://consurf.tau.ac.il/clmenu.css
> >
> >GET /clmenu.css HTTP/1.1
> >Host: consurf.tau.ac.il
> >User-Agent: Mozilla/5.0 (Macintosh; U; Intel Mac OS X 10.7; en-US;
> >rv:1.9.2.27) Gecko/20120216 Firefox/3.6.27
> >Accept: text/css,*/*;q=0.1
> >Accept-Language: en-us,en;q=0.5
> >Accept-Encoding: gzip,deflate
> >Accept-Charset: ISO-8859-1,utf-8;q=0.7,*;q=0.7
> >Keep-Alive: 115
> >Connection: keep-alive
> >Referer: http://consurf.tau.ac.il/results/1330803099/output.php
> >Cookie: __utma=128144414.851853261.1330802995.1330802995.1330802995.1;
> >__utmb=128144414.6.10.1330802995; __utmc=128144414;
> >__utmz=128144414.1330802995.1.1.utmcsr=google|utmccn=(organic)|utmcmd=or
> >ganic|utmctr=consurf
> >
> >HTTP/1.1 200 OK
> >Date: Sat, 03 Mar 2012 19:33:16 GMT
> >Server: Apache/2.2.8 (EL)
> >Last-Modified: Wed, 26 Aug 2009 14:27:51 GMT
> >Etag: "602fb-128-4720c418127c0"
> >Accept-Ranges: bytes
> >Content-Length: 296
> >Connection: close
> >Content-Type: text/css
> >----------------------------------------------------------
> >http://consurf.tau.ac.il/javascript_functions.js
> >
> >GET /javascript_functions.js HTTP/1.1
> >Host: consurf.tau.ac.il
> >User-Agent: Mozilla/5.0 (Macintosh; U; Intel Mac OS X 10.7; en-US;
> >rv:1.9.2.27) Gecko/20120216 Firefox/3.6.27
> >Accept: */*
> >Accept-Language: en-us,en;q=0.5
> >Accept-Encoding: gzip,deflate
> >Accept-Charset: ISO-8859-1,utf-8;q=0.7,*;q=0.7
> >Keep-Alive: 115
> >Connection: keep-alive
> >Referer: http://consurf.tau.ac.il/results/1330803099/output.php
> >Cookie: __utma=128144414.851853261.1330802995.1330802995.1330802995.1;
> >__utmb=128144414.6.10.1330802995; __utmc=128144414;
> >__utmz=128144414.1330802995.1.1.utmcsr=google|utmccn=(organic)|utmcmd=or
> >ganic|utmctr=consurf
> >If-Modified-Since: Wed, 25 Jan 2012 10:51:11 GMT
> >If-None-Match: "68073-4d74-4b7580aada5c0"
> >Cache-Control: max-age=0
> >
> >HTTP/1.1 304 Not Modified
> >Date: Sat, 03 Mar 2012 19:33:16 GMT
> >Server: Apache/2.2.8 (EL)
> >Connection: close
> >Etag: "68073-4d74-4b7580aada5c0"
> >----------------------------------------------------------
> >http://consurf.tau.ac.il/clmenu.js
> >
> >GET /clmenu.js HTTP/1.1
> >Host: consurf.tau.ac.il
> >User-Agent: Mozilla/5.0 (Macintosh; U; Intel Mac OS X 10.7; en-US;
> >rv:1.9.2.27) Gecko/20120216 Firefox/3.6.27
> >Accept: */*
> >Accept-Language: en-us,en;q=0.5
> >Accept-Encoding: gzip,deflate
> >Accept-Charset: ISO-8859-1,utf-8;q=0.7,*;q=0.7
> >Keep-Alive: 115
> >Connection: keep-alive
> >Referer: http://consurf.tau.ac.il/results/1330803099/output.php
> >Cookie: __utma=128144414.851853261.1330802995.1330802995.1330802995.1;
> >__utmb=128144414.6.10.1330802995; __utmc=128144414;
> >__utmz=128144414.1330802995.1.1.utmcsr=google|utmccn=(organic)|utmcmd=or
> >ganic|utmctr=consurf
> >
> >HTTP/1.1 200 OK
> >Date: Sat, 03 Mar 2012 19:33:16 GMT
> >Server: Apache/2.2.8 (EL)
> >Last-Modified: Thu, 13 Aug 2009 12:31:33 GMT
> >Etag: "602e0-892-471051da57340"
> >Accept-Ranges: bytes
> >Content-Length: 2194
> >Connection: close
> >Content-Type: application/x-javascript
> >----------------------------------------------------------
> >http://consurf.tau.ac.il/text_8_7.css
> >
> >GET /text_8_7.css HTTP/1.1
> >Host: consurf.tau.ac.il
> >User-Agent: Mozilla/5.0 (Macintosh; U; Intel Mac OS X 10.7; en-US;
> >rv:1.9.2.27) Gecko/20120216 Firefox/3.6.27
> >Accept: text/css,*/*;q=0.1
> >Accept-Language: en-us,en;q=0.5
> >Accept-Encoding: gzip,deflate
> >Accept-Charset: ISO-8859-1,utf-8;q=0.7,*;q=0.7
> >Keep-Alive: 115
> >Connection: keep-alive
> >Referer: http://consurf.tau.ac.il/results/1330803099/output.php
> >Cookie: __utma=128144414.851853261.1330802995.1330802995.1330802995.1;
> >__utmb=128144414.6.10.1330802995; __utmc=128144414;
> >__utmz=128144414.1330802995.1.1.utmcsr=google|utmccn=(organic)|utmcmd=or
> >ganic|utmctr=consurf
> >If-Modified-Since: Wed, 25 Jan 2012 10:51:13 GMT
> >If-None-Match: "680d7-f19-4b7580acc2a40"
> >Cache-Control: max-age=0
> >
> >HTTP/1.1 304 Not Modified
> >Date: Sat, 03 Mar 2012 19:33:16 GMT
> >Server: Apache/2.2.8 (EL)
> >Connection: close
> >Etag: "680d7-f19-4b7580acc2a40"
> >----------------------------------------------------------
> >http://consurf.tau.ac.il/consurf_logo.bmp
> >
> >GET /consurf_logo.bmp HTTP/1.1
> >Host: consurf.tau.ac.il
> >User-Agent: Mozilla/5.0 (Macintosh; U; Intel Mac OS X 10.7; en-US;
> >rv:1.9.2.27) Gecko/20120216 Firefox/3.6.27
> >Accept: image/png,image/*;q=0.8,*/*;q=0.5
> >Accept-Language: en-us,en;q=0.5
> >Accept-Encoding: gzip,deflate
> >Accept-Charset: ISO-8859-1,utf-8;q=0.7,*;q=0.7
> >Keep-Alive: 115
> >Connection: keep-alive
> >Referer: http://consurf.tau.ac.il/results/1330803099/output.php
> >Cookie: __utma=128144414.851853261.1330802995.1330802995.1330802995.1;
> >__utmb=128144414.6.10.1330802995; __utmc=128144414;
> >__utmz=128144414.1330802995.1.1.utmcsr=google|utmccn=(organic)|utmcmd=or
> >ganic|utmctr=consurf
> >If-Modified-Since: Mon, 27 Aug 2007 16:38:05 GMT
> >If-None-Match: "604eb-53a96-438b0fb199540"
> >Cache-Control: max-age=0
> >
> >HTTP/1.1 304 Not Modified
> >Date: Sat, 03 Mar 2012 19:33:17 GMT
> >Server: Apache/2.2.8 (EL)
> >Connection: close
> >Etag: "604eb-53a96-438b0fb199540"
> >----------------------------------------------------------
> >
> >
> >On Sat, Mar 3, 2012 at 11:01 AM, Shane Neeley <shane.neeley_at_gmail.com>
> >wrote:
> >
> >
> > Hi,
> >
> > Please bare with me, I am new to both cURL and HTML. I have an
> >interesting problem and I would like to be able to use cURL to solve it.
> >I am trying to access a server located here:
> >
> > http://consurf.tau.ac.il/index_full_form_PROT.php
> >
> > I will write a python program that will use cURL to add text to
> >the box that says "Paste protein sequence here"
> > Then all I need to do is press the submit button at the bottom. I
> >am trying to automate this process over thousands of files and I heard
> >that cURL might be a great way to do it.
> >
> > Here would be an example of the FASTA format in quotes that it is
> >talking about.
> > ">
> > DGVGSSSGNWHCDSTWLGDRVITTSTRTWALPTYNNHLYKQISNGTSGGATNDNTYFGYST"
> >
> > Could somebody please show me how I could fill out that form using
> >cURL in my terminal? Thank you sincerely.
> >
> > Shane.
> >
>
>
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Received on 2012-03-07